Butternut Squash Macaroni and Cheese

Butternut Squash Macaroni and Cheese is a creamy & flavorful version of a comfort food classic. It is perfect for sneaking in extra veggies!

This Butternut Squash Macaroni And Cheese is not only delightfully creamy, it is also as nutritious as it is delicious. Use that delicious puree all week long in Butternut Squash Bisque, Butternut Squash And Quinoa Chili, or Roasted Butternut Squash Soup.

Butternut Squash Macaroni and Cheese served in a rustic bowl

Light + Creamy Pasta dish

One of my favorite types of squash to cook with has to be butternut squash. It’s incredibly versatile and can be used in just about every way imaginable (even ravioli or chili!).

This time around I made a creamy pot of lightened-up comfort food: butternut squash macaroni & cheese.

I have to admit, my husband was super skeptical about how this dinner recipe would turn out, and I was too. I wanted to make sure that the flavor of the squash was present, but not overpowering. By subbing out some of the cheese for squash, it gave this macaroni a really thick and creamy base.

I think this has to be my new favorite macaroni. I mean how can I not love it? It’s cozy, comforting, and best of all lightened up!

The flavor and texture of the butternut squash is perfect for a dish like this—we loved it!! I hope you’ll give this recipe a try, I think you’ll love it too!

roasted squash for Butternut Squash Macaroni and Cheese

Making butternut squash macaroni and cheese

BUTTERNUT SQUASH. Cut the squash in half, remove the seeds or “guts,” brush it with olive oil, sprinkle on some salt and then place the halves face down on a parchment lined baking sheet. Bake at 425 degrees until fork tender. Place the squash into a food process or blender (or use an emulsion blender) to puree it and then use it in whatever you want! 

PASTA. Fill a dutch oven or heavy bottom stock pot with water, bring to a boil. Add the pasta and cook according to the package directions. Drain and transfer to a large bowl.

SAUCE. In a glass measuring cup heat the 2 c. of milk for 45 seconds on HIGH in the microwave, set aside. Return the pot to low heat, melt the butter and sauté garlic and onion until translucent, then whisk in the flour. Bring the heat up to medium and cook for 1-2 minutes or until the mixture begins to bubble (but not brown). Add 1½ c. of the warm whole milk and whisk to combine. Bring the mixture to a boil, it will thicken substantially.

CHEESE. Add the butternut squash puree, salt and spices, continue whisking. Turn the heat down to low and add the cheddar cheese and parmesan, stirring constantly until it has melted into the sauce. Stir in the remaining ½ c. of milk.

COMBINE. Add the cooked pasta and stir to coat. Remove from the heat and garnish with additional cheese or desired toppings.

cooked macaroni pasta for Butternut Squash Macaroni and Cheese

Tips + Variations

  • Add in any extra veggies that you like. Broccoli, cauliflower, or asparagus would all be especially good choices.
  • Canned pumpkin puree can be used instead of squash in this dish.
  • Add in some protein with some cooked ham, chicken, or sausage.
  • Smoked gouda, pepper jack, Mexican blend, or Mozzarella cheese can be used instead of the sharp cheddar.
  • Add a bit of dried sage, dijon mustard, fresh rosemary, or extra garlic for some added flavor.
  • Add some diced jalapenos or sprinkle in a little hot sauce for some extra spiciness.
fork full of garnished Butternut Squash Macaroni and Cheese

Storing Info

STORE leftovers wrapped tightly for up to 4-5 days in the fridge.

To FREEZE leftovers, wrap them tightly with aluminum foil and store for up to 4 months.

To REHEAT frozen leftovers, bake in a 400 degree oven for 30 minutes, OR microwave on high for 3 minutes stirring halfway through cook time.

Butternut Squash Macaroni and Cheese served in a rustic bowl

for More Macaroni And Cheese Recipes, try:

Did you try this recipe? Leave a ⭐️ rating below and share it on Instagram, Facebook and Pinterest!

A bowl of butternut squash mac n cheese served on a table.

Butternut Squash Macaroni and Cheese Recipe

Creamy, cheesy, and naturally nourishing, Butternut Squash Macaroni and Cheese is a wholesome comfort food that comes together effortlessly in 25 minutes!
5 from 3 votes
Pin Rate
Course: Main Dishes, Side Dish
Cuisine: American, Italian
Diet: Vegetarian
Prep Time: 5 minutes
Cook Time: 20 minutes
Total Time: 25 minutes
Servings: 6
Calories: 408kcal
Author: Andrea
Print (email required)

Recommended Products

Ingredients

  • 2 1/2 cup elbow macaroni
  • 2 tbsp unsalted butter
  • 1 clove garlic - minced
  • 1/4 cup yellow onion - finely chopped
  • 2 tbsp all-purpose flour
  • 2 cup whole milk - warmed
  • 1 cup butternut squash puree
  • 1 teaspoon salt
  • 1/2 tsp black pepper
  • 1/4 tsp paprika
  • 1/8 tsp cayenne pepper
  • 1/4 tsp onion powder
  • 3/4 tsp dry mustard
  • 1 cup sharp cheddar cheese - grated
  • 2 tbsp Parmesan cheese - grated

Garnishes

  • toasted breadcrumbs
  • crisp bacon pieces
  • freshly minced herbs
Save this recipe!
Get this sent to your inbox, plus get new and favorite recipes from us!

Instructions

  • Fill a Dutch oven or heavy-bottom stock pot with water and bring it to a boil. Add the pasta and cook according to the package directions. Drain and transfer to a large bowl.
  • In a glass measuring cup, heat the 2 cups of milk for 45 seconds on HIGH in the microwave, then set it aside.
  • Return the pot to low heat, melt the butter, and sauté the garlic and onion until translucent. Whisk in the flour. Bring the heat up to medium and cook for 1–2 minutes or until the mixture begins to bubble (but not brown). Add 1½ cups of the warm whole milk and whisk to combine. Bring the mixture to a boil—it will thicken substantially.
  • Add the butternut squash puree, salt, and spices, continuing to whisk. Turn the heat down to low and add the cheddar cheese and Parmesan, stirring constantly until it has melted into the sauce. Stir in the remaining ½ cup of milk.
  • Add the cooked pasta and stir to coat. Remove from heat and garnish with additional cheese or desired toppings.

NOTES

-Use any pasta you have on hand (we used whole wheat elbows). For extra flavor, broil the dish for a few minutes to brown the cheese—try using a cast iron skillet for the best results.
-Make your own puree by halving a small butternut squash, removing the seeds, rubbing with olive oil, and roasting face down on a parchment-lined baking sheet at 425°F (218°C) for 25–30 minutes until fork-tender.
-Easily double this recipe to serve more people without changing the cooking process.
STORE Macaroni and Cheese Butternut Squash leftovers in an airtight container or wrapped tightly in the refrigerator for up to 4–5 days. To FREEZE, let the mac and cheese cool completely before wrapping it tightly with aluminum foil and placing it in a freezer-safe container for up to 4 months. 
When REHEATING, bake frozen leftovers in a 400 degrees Fahrenheit (204 degrees Celsius) oven for 30 minutes or microwave on high for 3 minutes, stirring halfway through. For refrigerated leftovers, warm over low heat on the stovetop with a splash of milk to restore creaminess.

Nutrition

Calories: 408kcal | Carbohydrates: 54g | Protein: 16g | Fat: 14g | Saturated Fat: 8g | Polyunsaturated Fat: 1g | Monounsaturated Fat: 3g | Trans Fat: 0.2g | Cholesterol: 40mg | Sodium: 576mg | Potassium: 375mg | Fiber: 3g | Sugar: 6g | Vitamin A: 2991IU | Vitamin C: 6mg | Calcium: 278mg | Iron: 1mg

Want more inspiration?

More Recipes You'll Love

About the Author

Frances

5 from 3 votes

Join the Conversation

Rate and Comment

Your email address will not be published. Required fields are marked *

Please click on the Stars below to share your Rating of this Recipe




Comments:

  1. 5 stars
    I love that there is butternut squash in this mac and cheese recipe! My kids didn’t even complain that there was veggies in this too.

  2. 5 stars
    This is really easy to make and tasted super delicious! Thank you so much for sharing this amazing butternut squash macaroni cheese recipe! Will surely have this again, highly recommended!